PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g02550
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 297aa    MW: 33237 Da    PI: 7.5694
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g02550genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.1e-19125225198
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k lt sd +++  l++ ++ a ++       ++k+  ++l+ +d++g +W++++ ++++++r++ltkGW +Fv +++L +gD+v+F   + +++ l+
  CA07g02550 125 FCKNLTASDINSNWGLTVRRDDAIKCfppldiTKEKPI-QELIATDLHGFEWQFTHVFQGQPRRHLLTKGWGKFVASKRLVVGDSVIFL--RGENGGLR 220
                 89****************************87434444.389***********************************************..3477779* PP

                 EEEE- CS
          B3  94 vkvfr 98 
                 v+++r
  CA07g02550 221 VGIRR 225
                 **997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-25119231IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-34121239IPR015300DNA-binding pseudobarrel domain
CDDcd100173.77E-18123225No hitNo description
PROSITE profilePS5086310.771125227IPR003340B3 DNA binding domain
SMARTSM010194.5E-17125227IPR003340B3 DNA binding domain
PfamPF023629.8E-17125225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDAITGSSHQ QQQQNHVLFQ GDNLYSELWK ACAGPMMDLP RPGERVFYFP MMHVELLKES  60
ADQIVPSFHL PSRILCRVIN IQLKVEPETD EVYTQITSLP EENQNDQTIP DALSPEPPTL  120
QFHSFCKNLT ASDINSNWGL TVRRDDAIKC FPPLDITKEK PIQELIATDL HGFEWQFTHV  180
FQGQPRRHLL TKGWGKFVAS KRLVVGDSVI FLRGENGGLR VGIRRCAHPS HNIGSSPVSS  240
QTVEGVLSVV SHAFAAGTLF SVYCQPRYNK PVTSSSRRTL LLHACSYKCL IVIFPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A7e-9742701270Auxin response factor 1
4ldw_A7e-9742701270Auxin response factor 1
4ldw_B7e-9742701270Auxin response factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579839.10.0PREDICTED: auxin response factor 1-like isoform X2
SwissprotQ8L7G06e-94ARFA_ARATH; Auxin response factor 1
TrEMBLV7BVJ52e-98V7BVJ5_PHAVU; Auxin response factor
TrEMBLM5XJV32e-98M5XJV3_PRUPE; Auxin response factor
TrEMBLD7TVI53e-98D7TVI5_VITVI; Auxin response factor
STRINGVIT_02s0025g01740.t018e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.44e-95auxin response factor 1